PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01196.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family STAT
Protein Properties Length: 1201aa    MW: 135151 Da    PI: 6.7517
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01196.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT155.71.2e-484085421120
                     STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisq............. 73 
                              ldv+l++ +++p++ + evva+L+y+d+g++vek+ da+a LL+sydG+e++s+drp+k++ Grasfklkisq             
  Sme2.5_01196.1_g00006.1 408 LDVTLMDNFSRPMTEEAEVVATLVYSDDGTPVEKPVDADAALLTSYDGIEYASSDRPSKVISGRASFKLKISQrilalekkidlls 493
                              89*********************************************************************955544444444444 PP

                     STAT  74 ..LsskcdnrLfrikfeipklkkypfleavskpirCisrsrntrssslt 120
                                Lsskc+nrLfri+f+ipkl kypfle++s+pirCisr+r+tr++sl+
  Sme2.5_01196.1_g00006.1 494 qqLSSKCENRLFRIRFDIPKLGKYPFLEVFSRPIRCISRNRSTRATSLM 542
                              449*****************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.170.150.204.0E-5373191IPR002579Peptide methionine sulphoxide reductase MrsB
SuperFamilySSF513161.62E-5276192IPR011057Mss4-like
TIGRFAMsTIGR003571.8E-5077192IPR002579Peptide methionine sulphoxide reductase MrsB
PfamPF016419.5E-4880191IPR002579Peptide methionine sulphoxide reductase MrsB
SuperFamilySSF498992.6E-8213329IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133851.7E-6217350No hitNo description
Gene3DG3DSA:3.30.505.103.3E-4812877IPR000980SH2 domain
SuperFamilySSF555502.84E-5813877IPR000980SH2 domain
PROSITE profilePS500018.684815904IPR000980SH2 domain
Gene3DG3DSA:3.30.200.203.4E-19905998No hitNo description
SuperFamilySSF561127.24E-769091195IPR011009Protein kinase-like domain
PROSITE profilePS5001139.9769221197IPR000719Protein kinase domain
SMARTSM002209.0E-329221195IPR000719Protein kinase domain
PfamPF000699.3E-489241189IPR000719Protein kinase domain
PROSITE patternPS001070928950IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.103.3E-459991194No hitNo description
PROSITE patternPS00108010441056IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0055114Biological Processoxidation-reduction process
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0033743Molecular Functionpeptide-methionine (R)-S-oxide reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1201 aa     Download sequence    Send to blast
MSMASSTLPI YSFSSAVNFS SKPQLGFSRK TLSCPTFGGS KNRISVSIRA MGSSASSSSS  60
KSDSAQEASK MDYSSISDEE WKKKLTNEQF YITRQKGTER AFTGEYWNTK TPGTYHCICC  120
DTPLFESSTK FDSGTGWPSY YQPIGNNVKS KMDLSIIFMP RQEVLCAACD AHLGHIFDDG  180
PPPTGKRYCI NRLKRGSMGI QDYSFLRDLQ VEFKEVTNRF SLCFWFYLNE ASTLPSTILY  240
QEHPDVTSHA PFLLLDEKMK ILLFPSLISS HSNITSGREV EHAISACEFP TKKWVHVGCE  300
VTQGLLHLYF DGKIVGEKSL TSSLNNDMGS DNSIISLTCI SGKDSQLDGY VYSSELFPTL  360
STIENHYVKD PPVQLSIDSS SAYEIEEDSD GVWSIVGGKA SCRRNFDLDV TLMDNFSRPM  420
TEEAEVVATL VYSDDGTPVE KPVDADAALL TSYDGIEYAS SDRPSKVISG RASFKLKISQ  480
RILALEKKID LLSQQLSSKC ENRLFRIRFD IPKLGKYPFL EVFSRPIRCI SRNRSTRATS  540
LMLRKSSLGI HLLNGSQSPV VDDGSSDLPC IVREAKQSPS SKRVKLGQEK LCANFKDDFM  600
LKQANGDSRS HSWTSEDNHA HQNSLVARPA SHGGAENFSS DSENSETTIS ATDDLPSNRG  660
PISDMVVFKY CLADLNERRL LLKEMAMTAK EEELATFAER VSLFSGCSHH RHQISMSKRL  720
IEEGIKCWNL ISNDNHHVLW ENLVSGLQEH FLKMTFGRTR SLTHQDFNLL RRVSGCQDLV  780
SQDNFEKLWC WLYPVAFTLS QQCISSLWGS TSPMWIEGFI TMEEAEFSLK NLGTLQEPGT  840
YILRFPTSRS WPHPDAGNLV VTYVGNDYTI HHRLLSLEFI YRWKRNQMVV QDSLSGGKLV  900
MFKSPKMNTM KSNMFLKRTM KLTNKDIIGS GGYGTVYKLT INESISFAVK RLNRISVEQD  960
RGFERELEAM GDIKHRNIVT LHGYYSTTQY NLLIYELMSN GSLDEVLHGK SAARKILDWP  1020
SRYKIALGAA RGLSYLHHDC IPHIIHRDIK SSNILLDHNL EARVSDFGLA TLMEPDKTHV  1080
STLVAGTFGY LAPEYFDTGK ATVKGDVYSF GVVLLELLTG KKPSDEAFLE EGTKLVTWVK  1140
AVVQEKREEY VVDKNLEEFP IDEVNYVFNI ALMCLEEDPC KRLTMAEVVI MLEQIKLNAL  1200
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4q5j_A2e-76900119616320Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_B2e-76900119616320Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1441740.0EF144174.1 Capsicum annuum methionine-R-sulfoxide reductase B4 protein (MsrB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348345.10.0PREDICTED: uncharacterized protein LOC102592228
TrEMBLA0A0V0INF70.0A0A0V0INF7_SOLCH; Putative ovule protein
STRINGSolyc07g062050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93942325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.11e-178SH2 domain protein A